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How To Install idba on jollyroger
To install idba just follow these instructions.
Are you having problems? You can always remove idba again by following the instructions at this link.
Install idba
/parrot/jollyroger/main///install/index.html iterative De Bruijn Graph De Novo short read assembler for transcriptome for transcriptome. It is purely de novo assembler based on only RNA sequencing reads. IDBA-Tran uses local assembly to reconstructing missing k-mers in low-expressed transcripts and then employs progressive cutoff on contigs to separate the graph into components. Each component corresponds to one gene in most cases and contains not many transcripts. A heuristic algorithm based on pair-end reads is then used to find the isoforms. Parrot 3.7 science 1.1.3-1
sudo apt-get install idba
Which will install idba and any other packages on which it depends.
Package Data
| Package | idba |
| Version | 1.1.3-1 |
| Maintainer | Debian Med Packaging Team |
| Description | iterative De Bruijn Graph De Novo short read assembler for transcriptome for transcriptome. It is purely de novo assembler based on only RNA sequencing reads. IDBA-Tran uses local assembly to reconstructing missing k-mers in low-expressed transcripts and then employs progressive cutoff on contigs to separate the graph into components. Each component corresponds to one gene in most cases and contains not many transcripts. A heuristic algorithm based on pair-end reads is then used to find the isoforms. |
| Distro | parrot |
| Release | jollyroger |
| Repo | main |
| Section | science |
