To install tree-puzzle-doc just follow these instructions.
/ubuntu/yakkety/universe///install/index.html Reconstruction of phylogenetic trees by maximum likelihood (doc) Ubuntu 16.10 universe/science 5.2-8build1
sudo apt-get install tree-puzzle-doc
Which will install tree-puzzle-doc and any other packages on which it depends.
|Description||Reconstruction of phylogenetic trees by maximum likelihood (doc)|